Algorithms for Molecular Biology

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Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps
Peter Meinicke, Thomas Lingner, Alexander Kaever, Kirstin Feussner, Cornelia Göbel, Ivo Feussner, Petr Karlovsky, Burkhard Morgenstern
Algorithms for Molecular Biology 2008, 3:9 (26 June 2008)
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Noisy: Identification of problematic columns in multiple sequence alignments
Andreas WM Dress, Christoph Flamm, Guido Fritzsch, Stefan Grünewald, Matthias Kruspe, Sonja J Prohaska, Peter F Stadler
Algorithms for Molecular Biology 2008, 3:7 (24 June 2008)
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DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment
Amarendran R Subramanian, Michael Kaufmann, Burkhard Morgenstern
Algorithms for Molecular Biology 2008, 3:6 (27 May 2008)
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On the optimality of the neighbor-joining algorithm
Kord Eickmeyer, Peter Huggins, Lior Pachter, Ruriko Yoshida
Algorithms for Molecular Biology 2008, 3:5 (30 April 2008)
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Protein sequence and structure alignments within one framework
Gundolf Schenk, Thomas Margraf, Andrew E Torda
Algorithms for Molecular Biology 2008, 3:4 (1 April 2008)
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A scoring matrix approach to detecting miRNA target sites
Simon Moxon, Vincent Moulton, Jan T Kim
Algorithms for Molecular Biology 2008, 3:3 (31 March 2008)
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Learning from positive examples when the negative class is undetermined- microRNA gene identification
Malik Yousef, Segun Jung, Louise C Showe, Michael K Showe
Algorithms for Molecular Biology 2008, 3:2 (28 January 2008)
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Reconstructing phylogenies from noisy quartets in polynomial time with a high success probability
Gang Wu, Ming-Yang Kao, Guohui Lin, Jia-Huai You
Algorithms for Molecular Biology 2008, 3:1 (24 January 2008)
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Evaluating deterministic motif significance measures in protein databases
Pedro Gabriel Ferreira, Paulo J Azevedo
Algorithms for Molecular Biology 2007, 2:16 (24 December 2007)
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Efficient and accurate P-value computation for Position Weight Matrices
Hélène Touzet, Jean-Stéphane Varré
Algorithms for Molecular Biology 2007, 2:15 (11 December 2007)
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Mapping sequences by parts
Gilles Didier, Carito Guziolowski
Algorithms for Molecular Biology 2007, 2:11 (19 September 2007)
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A basic analysis toolkit for biological sequences
Raffaele Giancarlo, Alessandro Siragusa, Enrico Siragusa, Filippo Utro
Algorithms for Molecular Biology 2007, 2:10 (18 September 2007)
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Local sequence alignments statistics: deviations from Gumbel statistics in the rare-event tail
Stefan Wolfsheimer, Bernd Burghardt, Alexander K Hartmann
Algorithms for Molecular Biology 2007, 2:9 (11 July 2007)
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