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  "Hook"-calibration of GeneChip-microarrays: Theory and algorithm Hans Binder, Stephan Preibisch Algorithms for Molecular Biology 2008, 3:12 (29 August 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research
 "Hook"-calibration of GeneChip-microarrays: Chip characteristics and expression measures Hans Binder, Knut Krohn, Stephan Preibisch Algorithms for Molecular Biology 2008, 3:11 (29 August 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research
 A stitch in time: Efficient computation of genomic DNA melting bubbles Eivind Tøstesen Algorithms for Molecular Biology 2008, 3:10 (17 July 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
  Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps Peter Meinicke, Thomas Lingner, Alexander Kaever, Kirstin Feussner, Cornelia Göbel, Ivo Feussner, Petr Karlovsky, Burkhard Morgenstern Algorithms for Molecular Biology 2008, 3:9 (26 June 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
  A weighted average difference method for detecting differentially expressed genes from microarray data Koji Kadota, Yuji Nakai, Kentaro Shimizu Algorithms for Molecular Biology 2008, 3:8 (26 June 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Software article
 Noisy: Identification of problematic columns in multiple sequence alignments Andreas WM Dress, Christoph Flamm, Guido Fritzsch, Stefan Grünewald, Matthias Kruspe, Sonja J Prohaska, Peter F Stadler Algorithms for Molecular Biology 2008, 3:7 (24 June 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
  DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment Amarendran R Subramanian, Michael Kaufmann, Burkhard Morgenstern Algorithms for Molecular Biology 2008, 3:6 (27 May 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
  On the optimality of the neighbor-joining algorithm Kord Eickmeyer, Peter Huggins, Lior Pachter, Ruriko Yoshida Algorithms for Molecular Biology 2008, 3:5 (30 April 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
  Protein sequence and structure alignments within one framework Gundolf Schenk, Thomas Margraf, Andrew E Torda Algorithms for Molecular Biology 2008, 3:4 (1 April 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
  A scoring matrix approach to detecting miRNA target sites Simon Moxon, Vincent Moulton, Jan T Kim Algorithms for Molecular Biology 2008, 3:3 (31 March 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
  Learning from positive examples when the negative class is undetermined- microRNA gene identification Malik Yousef, Segun Jung, Louise C Showe, Michael K Showe Algorithms for Molecular Biology 2008, 3:2 (28 January 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
 Reconstructing phylogenies from noisy quartets in polynomial time with a high success probability Gang Wu, Ming-Yang Kao, Guohui Lin, Jia-Huai You Algorithms for Molecular Biology 2008, 3:1 (24 January 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
  Evaluating deterministic motif significance measures in protein databases Pedro Gabriel Ferreira, Paulo J Azevedo Algorithms for Molecular Biology 2007, 2:16 (24 December 2007) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
  Efficient and accurate P-value computation for Position Weight Matrices Hélène Touzet, Jean-Stéphane Varré Algorithms for Molecular Biology 2007, 2:15 (11 December 2007) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Book report
 Review of "Reconstructing Evolution: New mathematical and computational advances" edited by Olivier Gascuel and Mike Steel Andreas Spillner Algorithms for Molecular Biology 2007, 2:14 (6 November 2007) [Abstract] [Full Text] [PDF] Research
  Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules Valentina Boeva, Julien Clément, Mireille Régnier, Mikhail A Roytberg, Vsevolod J Makeev Algorithms for Molecular Biology 2007, 2:13 (10 October 2007) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Research
 Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid representation Rodrigo Gouveia-Oliveira, Anders G Pedersen Algorithms for Molecular Biology 2007, 2:12 (3 October 2007) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
  Mapping sequences by parts Gilles Didier, Carito Guziolowski Algorithms for Molecular Biology 2007, 2:11 (19 September 2007) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Software article
  A basic analysis toolkit for biological sequences Raffaele Giancarlo, Alessandro Siragusa, Enrico Siragusa, Filippo Utro Algorithms for Molecular Biology 2007, 2:10 (18 September 2007) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
 Local sequence alignments statistics: deviations from Gumbel statistics in the rare-event tail Stefan Wolfsheimer, Bernd Burghardt, Alexander K Hartmann Algorithms for Molecular Biology 2007, 2:9 (11 July 2007) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
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