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Survival associated pathway identification with group Lp penalized global AUC maximization
Zhenqiu Liu, Laurence S Magder, Terry Hyslop, Li Mao
Algorithms for Molecular Biology 2010, 5:30 (16 August 2010)
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Research
An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies
Pavel V Mazin, Mikhail S Gelfand, Andrey A Mironov, Aleksandra B Rakhmaninova, Anatoly R Rubinov, Robert B Russell, Olga V Kalinina
Algorithms for Molecular Biology 2010, 5:29 (15 July 2010)
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Research
Optimal selection of epitopes for TXP-immunoaffinity mass spectrometry
Hannes Planatscher, Jochen Supper, Oliver Poetz, Dieter Stoll, Thomas Joos, Markus F Templin, Andreas Zell
Algorithms for Molecular Biology 2010, 5:28 (25 June 2010)
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Research
Inverse folding of RNA pseudoknot structures
James ZM Gao, Linda YM Li, Christian M Reidys
Algorithms for Molecular Biology 2010, 5:27 (23 June 2010)
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Research
On the use of cartographic projections in visualizing phylo-genetic tree space
Kenneth Sundberg, Mark Clement, Quinn Snell
Algorithms for Molecular Biology 2010, 5:26 (8 June 2010)
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Research
Polynomial algorithms for the Maximal Pairing Problem: efficient phylogenetic targeting on arbitrary trees
Christian Arnold, Peter F Stadler
Algorithms for Molecular Biology 2010, 5:25 (2 June 2010)
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Software article
AlignMiner: a Web-based tool for detection of divergent regions in multiple sequence alignments of conserved sequences
Darío Guerrero, Rocío Bautista, David P Villalobos, Francisco R Cantón, M Gonzalo Claros
Algorithms for Molecular Biology 2010, 5:24 (2 June 2010)
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Research
Differential co-expression framework to quantify goodness of biclusters and compare biclustering algorithms
Burton Kuan Hui Chia, R Krishna Murthy Karuturi
Algorithms for Molecular Biology 2010, 5:23 (28 May 2010)
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Research
Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions
Stefan E Seemann, Andreas S Richter, Jan Gorodkin, Rolf Backofen
Algorithms for Molecular Biology 2010, 5:22 (21 May 2010)
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Research
Sequence embedding for fast construction of guide trees for multiple sequence alignment
Gordon Blackshields, Fabian Sievers, Weifeng Shi, Andreas Wilm, Desmond G Higgins
Algorithms for Molecular Biology 2010, 5:21 (14 May 2010)
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Meeting report
Challenges in experimental data integration within genome-scale metabolic models
Pierre-Yves Bourguignon, Areejit Samal, François Képès, Jürgen Jost, Olivier C Martin
Algorithms for Molecular Biology 2010, 5:20 (22 April 2010)
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Research
Distinguishing between hot-spots and melting-pots of genetic diversity using haplotype connectivity
Binh Nguyen, Andreas Spillner, Brent C Emerson, Vincent Moulton
Algorithms for Molecular Biology 2010, 5:19 (20 March 2010)
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Research
Robinson-Foulds Supertrees
Mukul S Bansal, J Gordon Burleigh, Oliver Eulenstein, David Fernández-Baca
Algorithms for Molecular Biology 2010, 5:18 (24 February 2010)
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Research
Association of repeatedly measured intermediate risk factors for complex diseases with high dimensional SNP data
Sandra Waaijenborg, Aeilko H Zwinderman
Algorithms for Molecular Biology 2010, 5:17 (11 February 2010)
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Software article
Jane: a new tool for the cophylogeny reconstruction problem
Chris Conow, Daniel Fielder, Yaniv Ovadia, Ran Libeskind-Hadas
Algorithms for Molecular Biology 2010, 5:16 (3 February 2010)
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Research
Exact distribution of a pattern in a set of random sequences generated by a Markov source: applications to biological data
Gregory Nuel, Leslie Regad, Juliette Martin, Anne-Claude Camproux
Algorithms for Molecular Biology 2010, 5:15 (26 January 2010)
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Research
ANMM4CBR: a case-based reasoning method for gene expression data classification
Bangpeng Yao, Shao Li
Algorithms for Molecular Biology 2010, 5:14 (6 January 2010)
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Research
A simple, practical and complete O-time Algorithm for RNA folding using the Four-Russians Speedup
Yelena Frid, Dan Gusfield
Algorithms for Molecular Biology 2010, 5:13 (4 January 2010)
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Research
FlexSnap: Flexible Non-sequential Protein Structure Alignment
Saeed Salem, Mohammed J Zaki, Chris Bystroff
Algorithms for Molecular Biology 2010, 5:12 (4 January 2010)
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Research
Efficient algorithms for analyzing segmental duplications with deletions and inversions in genomes
Crystal L Kahn, Shay Mozes, Benjamin J Raphael
Algorithms for Molecular Biology 2010, 5:11 (4 January 2010)
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